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A Science Blog By MSSRF Scholars And Alumni
Saturday, 31 December 2011
Is Astrology (Indian) Unscientific Venki?
Venki was of the skepticism that astrology along with homeopathy are belief based and could just be fake (according to the news reports). Being an Indian who always has wondered and contemplated about Indian astrology which predicts (precisely!) about different eclipses every year, along with planetary position, I was not able to completely appreciate Venki's opinion, though I too have some reservations about certain aspects of Indian astrology that is purely based on superstition. I don't agree with his analogy of Vitamin C of Linus Pauling. There is definitely a scientific possibility of Vitamin C being a potent anti-oxidant, having potential roles in reducing the risk of cancer and other diseases. I feel it is absolutely scientific to speculate and also suggest that something has a potential as it is equally important to prove it. In the case of vitamin C at least there are quite a few studies that have proven its usefulness in treating (if not curing) some health related defects. Based on this, certain suggestions extrapolating its benefits are bound to come.
Also, Indian astrology at least from what I've read and come to know is not just based on beliefs. It is also based on the impeccable wisdom and observational and analytical brains of our ancestors, who may not have actually recorded their observations as meticulously a modern day scientist does. Our ancestors passed on scientific experience biologically, through sharing their wisdom. Perhaps they thought genetic imprints of knowledge transmitted by 'teaching through practice' would stay immortal as compared to hard prints on a paper. I also feel some of their data which were recorded on non-paper surfaces would have got destroyed or lost. Even today, there are persons in India who calculate (perhaps not using formulas discovered by European or Western mathematicians) planetary positions for the future of earth, its climate, monsoon etc.
I have also had reasonably good experience with homeopathy and other alternative medicines. For example, for cold and allergic esinophilia or even asthma, homeopathy could be a viable alternative to modern medicine where there is no cure. I don't say homeopathy cures asthma. I just say, based on experience of several people, it can alleviate allergic asthma and cold. Of course, nobody has recorded or defined what exactly alleviates asthma in homeopathic formulations, but the truth is it does have positive effects. Sometimes, a purely reductionist approach in science will not work as it worked for ribosome structure and its subsequent utility in antibiotics discovery. The flaw to me only lies with modern science. It doesn't allow and accept people from other medicines to define drug and disease response in a holistic manner. It has gone too deep into the ocean that modern medicine refuses to see the existence of light above the ocean.
I did not have the opportunity to attend Venki's lecture. It is possible that he is misquoted or partially or selectively quoted by the media. But if the media reports are true, I would only argue with Venki regarding his skepticism and also suggest to him, that being a scientist, he should have reviewed literature and data on Indian astrology at least, before being dismissive of astrology as a fake subject. I totally agree with him that astrological predictions should not be based on superstitions.
This is not an emotional reaction by an Indian to Venki's observation; just a counter argument by an 'Argumentative Indian'.
Saturday, 24 December 2011
Animation on RNA interference
RNA interference (RNAi) RNA interference (RNAi) is an important pathway that is used in many different organisms to regulate gene expression. This animation introduces the principles of RNAi involving small interfering RNAs (siRNAs) and microRNAs (miRNAs). We take you on an audio-visual journey through the steps of gene expression and show you an up-to-date view of how RNAi can silence specific mRNAs in the cytoplasm.
Friday, 23 December 2011
Is Researchers are a Competent Researcher?
Wednesday, 21 December 2011
The Origin of Life - Abiogenesis - Dr. Jack Szostak
It's been 55 years since the Miller-Urey Experiment, and science has made enormous progress on solving the origin of life. This video summarizes one of the best leading models. Yes there are others. Science may never know exactly how life DID start, but we will know many ways how life COULD start. Don't be fooled by creationist arguments as even a minimal understanding of biology and chemistry is enough to realize they have no clue what they are talking about.
Note on how competition works. Water will flow across a membrane to try to equalize the ion concentration. If there is a lot of polymer in a vesicle it will be surrounded by many ions, thus causing water to flow into the vesicle, increasing the internal pressure and stretching the membrane. Fatty acids are in equilibrium between the vesicle and solution. If 2 vesicles are near one another they will gradually swap fatty acids. If one membrane is under tension, the fatty acid "on rate" will be greater than the "off rate" (move to a lower energy state by relaxing the pressure). It will suck up fatty acids from solution. The other vesicle will still give them off, but they will disappear (sucked up by neighbor) and not return. Therefore, the vesicle with high internal pressure will grow and the neighbor will shrink.
Monday, 19 December 2011
How does A "Good" Protein Hurt Brain Cells after Clot-induced Stroke?
As we all know stroke in human is one of the major problems as it causes sudden death of brain cells. It occurs mainly due to lack of oxygen, when the blood flow to the brain is stopped. There are two main types of strokes; one is ischemic stroke, where blockage of blood flows to a portion of brain occurs by blood clot. The other type is Hemorrhagic stroke, it is caused by the rupture of blood vessel in the brain.
During stroke, the production of thrombin (a "trypsin-like" serine protease protein that has many roles such as blood coagulation, fibrin formation, and platelet activation) is more and plays a negative role as it damages the brain cells. Previously thrombin was found only in Hemorrhagic stroke and now Patrick D. Lyden and his group have found that presence of thrombin Ischemic stroke also.
http://www.medicalnewstoday.com/releases/238238.php
http://www.cdc.gov/stroke/types_of_stroke.htm
LIGER
On a typical day he will devour 20lb of meat, usually beef or chicken, and is capable of eating 100lb at a single setting. At just three years old, Hercules already weighs half a ton.
the lion boys was getting along with a tiger girl, then lo and behold we had a liger."
Sunday, 18 December 2011
Role of formylated methionine in prokaryotes?
Why in prokaryotes (Bacterias) start codon Methionine is formylated but not in eukaryotes? What will be the significance of formylated methionine in prokaryotes?
Group leaders and Bench work?
Just thought would post this picture whisked from the web. This could be the scenario in most labs, should we think it might not apply to us as most of us don't wear labcoats at all?:)
Novel application of Laser Transmission Spectroscopy technology (LTS) as a DNA diagnostic tool
Hi All,
Here is an interesting new technique called Laser Transmission Spectroscopy (LTS), a quantitative and rapid in vitro technique used to measure the size, shape and number of nano particles in suspension. Physicists Carol Tanner and Steven Ruggiero from the University of Notre Dam have applied LTS as a novel detection method for species-specific DNA detection.
LTS technique has many advantages over other established DNA detection techniques. The technique is highly sensitive and takes only a few seconds to genetically score a sample for species presence or absence. This technique could possibly eliminate the need for pcr amplication of products required to do marker analysis or in forensic studies.
Although the current paper describes the use of LTS in invasive species detection, the Notre Dame researchers believe that the technique could serve as an important tool in detecting human pathogens and understanding and indicating the presence of genetic diseases such as cancer.
Full-length Article can be obatined from
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0029224
Saturday, 17 December 2011
Mouthless and gutless animal????????
For more information: http://www.ncbi.nlm.nih.gov/pubmed/22131640
http://schaechter.asmblog.org/
Sorry for such a late entry here. Just came across this article and thought it will be useful to all. Its on Rules for Searching and Organizing the Scientific Literature. Its available @ the following link
http://precedings.nature.com/documents/3867/version/1/files/npre20093867-1.pdf
Thanks
How far can we see?
I have a question. How far our eyes can see. What will be maximum distance we can see an object with human eye.
Keeping Bacteria at a distance
As we all know that Human Gut (Digestive system) is flooded with trillions of bacteria which helps in digestion and energy production, but most of us (may be I am) do not know how these bacterias prevent themselves from our immune system. Here is an article which discusses about our Gut microflora and how they are maintained in our gut with out any infection to the host system.
Friday, 16 December 2011
Marker free transgenic crop plants
I just thought about marker free transgenic crop plants when i was cloning a gene (the gene which i work on) in plant expression vector that we recently bought in our lab. The thought was to generate plant with vector merely having desired gene, promoter, terminator and of course, the DNA region required for integration. It should not have any marker genes like hygromycin, kanamycin and even reporter genes such as GUS, GFP. The question came in my mind is that why do we need to use all these genes to screen transgenic plants when we have primers.
Are those marker genes going to enhance transformation frequency?
Is that laborious or not possible to generate transgenic plants with out having selection markers?
I welcome your comments and suggestions.
Chew gum, lose weight
Syracuse University scientist uses vitamin B12 to orally deliver appetite-suppressing hormone”
Is blogging on science useful?
I was just thinking how blogging could be a useful utility for scientist... I guess I ended up thinking only about useful aspects of blogging that would run into pages! Thoughts travel faster than the speed of light, if only I can measure. But I'm sure my thoughts can reach some scientist at least in seconds if only the scientist at the other end has access to internet. My hypotheses, abstract musings, enthusiastic questions etc can all be read, reviewed, openly criticized and refined only through this wonderful open access but underutilized(by scientists) phenomenon called 'Blogging'.
I don't have to be a Shakespeare and Einstein at the same time to worry about my abstract scientific thoughts into readable English in a blog. In fact, I can convey what I want to convy in a much more casual way and yet get benefited with a thorough scrutiny by those who read it. I see blogging to be the starting point of a budding researcher's venture into writing for peer-reviewed journals. Above all, blogging makes me not worry about impact factors!!
I was forced to blog about my thoughts on blogging and science primarily because I saw only names in contributors' list but the actual contribution is only from a few! So, let us shun fears of presenting good English, Newtonian science and hesitation and start blogging about science in the true sense without any inhibitions, with just curiosity on mind! If some one is going to suggest time as an excuse, please take a 'time loan' from Facebook or Orkut or Twitter or any of those chat mechanisms that distract. Waiting to see you all blogging on science, because blogging is also a way expand one's scientific acumen.
Wednesday, 14 December 2011
Where is the ultimate origin?
There are again two different ways to ask the question: How am I here and why am I here? and what is my physical origin or the ultimate particle that lead me to do the function of typing at present? The first question is not within the scope of this blog. But the second one, possible to answer through some experiments may in fact reveal the existence or non-existence of the 'God Particle'! There is nothing to do with theism to name it 'God particle'. Just that scientists, particularly physicists perhaps thought it fanciful to name it so.
As a biologist I can always say since I believe in Darwinism and theory of evolution that my ancestors could be and perhaps were bacteria (the limit of origin as I imagine in biological time scale). But then does it stop there? Certainly not! I would be too microscopic not in the sense that bacteria can be seen only using the microscopes, but in the sense that earth is just a small microcosm in the whole universe that till recently has been proven not just to be expanding, but in acceleration!
I am at a time point (perhaps millions and millions of light years from the 'God particle') where it is extremely difficult to even imagine about the original particle that started of the creation of universe. But then there is always a way to experimentally explore through something called 'particle accelerators' (like CERN Large Hardon Collider) to try and recreate the creation of the 'God particle' scientifically termed Higgs Boson. There is a very latest news that the search for it could have been narrowed down.
It must be remembered however that these experiments are recreations of a creation and normally take years in spite of technological advancements. Also, the particle may not be detected at all. So, 'God particle' may or may not be a reality at this point in time. But I strongly feel there must have been some particle that brought me to earth after several expansions of the universe and after very recently (in terms of light years at least!) Darwin took notice of the biological expansion of species!
Tuesday, 13 December 2011
Novel technique reveals both gene number and protein expression simultaneously
As most of us are working on analysing the gene activity and protein expression here is a technique called Fluorescent in situ gene protein assay that allows us to address gene activity and corresponding protein expression in the same cells at the same time. The new assay is described in the August issue of the journal Neuro-Oncology
Novel technique reveals both gene number and protein expression simultaneously
Monday, 12 December 2011
What is the best way to do science in India?!
Wednesday, 7 December 2011
Evidence of cross kingdom Regulation: Plant miRNA can regulate Human Low Density Lipoprotein receptor adaptor protein 1 (LDLRAP1)
http://immunotrends.blogspot.com/2010/05/micrornas-mirna-are-small-noncoding_8794.html
MicroRNAs (miRNAs), a class of 19-24 nucleotide long non-coding RNAs derived from hairpin precursors, mediate the post-transcriptional silencing of an estimated 30% of protein-coding genes in mammals by pairing with complementary sites in the 3′ untranslated regions (UTRs) of target genes. miRNAs have been widely shown to modulate various critical biological processes,
including differentiation, apoptosis, proliferation, the immune response, and the maintenance of cell and tissue identity. We next characterized the possible carrier of circulating miRNAs. Microvesicles (MVs) are small vesicles that are shed from almost all cell types under both normal and pathological conditions [13, 14]. They bear surface receptors/ligands of the original cells and have the
potential to selectively interact with specific target cells and mediate intercellular communication by transporting Plant MIR168a downregulates mammalian LDLRAP1 bioactive lipids, mRNA, or proteins between cells.
Their previous studies have demonstrated that stable microRNAs (miRNAs) in mammalian serum and plasma are actively secreted from tissues and cells and can serve as a novel class of biomarkers for diseases, and act as signaling molecules in intercellular communication. Here, we report the surprising finding that exogenous plant miRNAs are present in the sera and tissues of various animals and that these exogenous plant miRNAs are primarily acquired orally, through food intake. MIR168a is abundant in rice and is one of the most highly enriched exogenous plant miRNAs in the sera of Chinese subjects. Functional studies in vitro and in vivo demonstrated that MIR168a could bind to the human/mouse low-density lipoprotein receptor adapter protein 1 (LDLRAP1) mRNA, inhibit LDLRAP1 expression in liver, and consequently decrease LDL removal from mouse plasma. These findings demonstrate that exogenous plant miRNAs in food can regulate the expression of target genes in mammals.
In this sense, miRNAs may represent a novel class of universal modulators that play an important role in mediating animal-plant interactions at the molecular level. Like vitamins, minerals and other essential nutrients derived from food sources, plant miRNAs may serve as a novel functional component of food and make a critical contribution to maintaining and shaping animal body structure and function. Extending from this concept, the intake of certain plant miRNAs generation after generation through a particular food source may leave an imprint on the genetic map of the human race. In conclusion, the discovery of plant miRNAs and their roles in the biology of mammalian cells and animal organs represents the first evidence of crosskingdom transfer of functionally active miRNAs and opens a new avenue to explore miRNA-mediated animalplant interactions.
Cell Research advance online publication 20 September 2011; doi:10.1038/cr.2011.158
http://www.nature.com/cr/journal/vaop/ncurrent/full/cr2011158a.html
Yours Scientifically,
Blog Archive
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2011
(29)
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December
(26)
- Is Astrology (Indian) Unscientific Venki?
- Animation on RNA interference
- Is Researchers are a Competent Researcher?
- The Origin of Life - Abiogenesis - Dr. Jack Szostak
- How does A "Good" Protein Hurt Brain Cells after C...
- LIGER
- Role of formylated methionine in prokaryotes?
- Group leaders and Bench work?
- Novel application of Laser Transmission Spectrosco...
- Mouthless and gutless animal????????
- Hi all, Sorry for such a late entry here. Just ca...
- How far can we see?
- Keeping Bacteria at a distance
- Marker free transgenic crop plants
- Chew gum, lose weight
- Is blogging on science useful?
- Where is the ultimate origin?
- Novel technique reveals both gene number and prote...
- What is the best way to do science in India?!
- Evidence of cross kingdom Regulation: Plant miRNA ...
- Are some people more attractive to mosquitoes?
- Artificially enhanced bacteria capable of producin...
- Engineered E.coli transforms switchgrass to fuels
- BioTechniques - Nanopore Traffic Control
- GLP1: Working with Radionuclides
- Welcome Address (belated:)
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December
(26)
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